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Showing results 1 to 16 of 16.
Issue DateTitleAuthor(s)TypeAccess
Dec-2005Evolutionary programming as a platform for in silico metabolic engineeringPatil, Kiran Raosaheb; Rocha, I.; Förster, Jochen, et al.ArticleOpen access
3-Nov-2009Heuristics for simulated annealing search of active sub-networks in bio-molecular interaction networksSoares, Simão; Rocha, I.; Patil, Kiran RaosahebAbstractOpen access
2013Identification of metabolic engineering targets through analysis of optimal and sub-optimal routesSoons, Zita; Ferreira, E. C.; Patil, Kiran Raosaheb, et al.ArticleOpen access
2011Identification of metabolic engineering targets through pathway analysisSoons, Zita; Patil, Kiran Raosaheb; Rocha, I.AbstractOpen access
1-Oct-2006An improved evolutionary algorithm-based framework for identifying in silico metabolic engineering targetsRocha, I.; Rocha, Miguel; Ferreira, E. C., et al.AbstractOpen access
2017Integration of biomass formulations of genome-scale metabolic models with experimental data reveals universally essential cofactors in prokaryotesXavier, Joana Rute Calça; Patil, Kiran Raosaheb; Rocha, IsabelArticleOpen access
16-Nov-2018Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotesXavier, Joana C.; Patil, Kiran Raosaheb; Rocha, I.ArticleOpen access
2010Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetesZelezniak, Aleksej; Pers, Tune H.; Soares, Simão, et al.ArticleOpen access
2008Natural computation meta-heuristics for the in silico optimization of microbial strainsRocha, Miguel; Maia, Paulo; Mendes, Rui, et al.ArticleOpen access
27-Jun-2009OptFlux: a software for metabolic engineeringRocha, I.; Maia, Paulo; Pinto, José P., et al.AbstractOpen access
Apr-2010OptFlux: an open-source software platform for in silico metabolic engineeringRocha, I.; Maia, Paulo; Evangelista, Pedro, et al.ArticleOpen access
2012Random sampling of elementary flux modes in large-scale metabolic networksMachado, C. D.; Soons, Zita; Patil, Kiran Raosaheb, et al.ArticleOpen access
26-Jun-2016Rational modular design of yeast strains towards overproduction of industrially relevant productsLopes, H.; Maia, Paulo; Patil, Kiran Raosaheb, et al.AbstractOpen access
2014Standardization and comparison of the biomass objective functions of manually curated genome-scale metabolic modelsXavier, Joana Rute Calça; Patil, Kiran Raosaheb; Rocha, I.AbstractOpen access
2014Systems biology perspectives on minimal and simpler cellsXavier, Joana Rute Calça; Patil, Kiran Raosaheb; Rocha, I.ArticleRestricted access (UMinho)
2011Towards a biologically relevant description of phenotypes based on pathway analysisSoons, Zita; Rocha, I.; Patil, Kiran RaosahebAbstractOpen access