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Issue DateTitleAuthor(s)TypeAccess
Jul-2006Qos constrained internet routing with evolutionary algorithmsRocha, Miguel; Sousa, Pedro; Rio, Miguel, et al.Conference paperOpen access
2011Quality of service constrained routing optimization using evolutionary computationRocha, Miguel; Sousa, Pedro; Cortez, Paulo, et al.ArticleOpen access
2013Re-annotation of the genome sequence of Helicobacter pylori 26695Resende, Tiago; Correia, Daniela M.; Rocha, Miguel, et al.ArticleOpen access
2002Real-Time Forecasting by Bio-Inspired ModelsCortez, Paulo; Rocha, Miguel; Allegro, Fernando Sollari, et al.Conference paperOpen access
8-Jun-2015Reconciling gene expression data with regulatory network modelsFaria, José P.; Overbeek, Ross; Taylor, Ronald C., et al.AbstractOpen access
8-Apr-2014Reconciling gene expression data with regulatory network models – a stimulon-based approach for integrated metabolic and regulatory modeling of Bacillus subtilisFaria, José P.; Overbeek, Ross; Taylor, Ronald C., et al.AbstractOpen access
2015Reconstructing genome-scale metabolic models with merlinDias, Oscar; Rocha, Miguel; Ferreira, E. C., et al.ArticleOpen access
7-Jan-2018Reconstructing high-quality large-scale metabolic models with merlinDias, Oscar; Rocha, Miguel; Ferreira, Eugénio C., et al.Book partRestricted access (UMinho)
2015Reconstructing transcriptional regulatory networks using data integration and text miningPereira, Rafael T.; Costa, Hugo; Carneiro, S., et al.Conference paperOpen access
Jun-2016Reconstruction of metabolic models for liver cancer cellsFerreira, Jorge; Correia, Sara Alexandra Gomes; Rocha, MiguelConference paperRestricted access (UMinho)
18-Sep-2015Reconstruction of regulatory network models and reconciliation with gene expression dataFaria, J. P.; Overbeek, Ross; Taylor, Ronald C., et al.AbstractOpen access
2016Reconstruction of the regulatory network for Bacillus subtilis and reconciliation with gene expression dataFaria, J.; Overbeek, Ross; Taylor, Ronald C, et al.ArticleOpen access
30-Jul-2014Reg4OptFlux: an OptFlux plug-in that comprises meta-heuristics approaches for metabolic engineering using integrated modelsRocha, Orlando; Vilaça, Paulo; Rocha, Miguel, et al.Conference paperOpen access
Jun-2000The relationship between learning and evolution in static and dynamic environmentsRocha, Miguel; Cortez, Paulo; Neves, JoséConference paperOpen access
2015Reverse engineering of logic-based differential equation models using a mixed-integer dynamic optimisation approachHenriques, David; Rocha, Miguel; Saez-Rodriguez, Julio, et al.ArticleOpen access
2018A review of dynamic modeling approaches and their application in computational strain optimization for metabolic engineeringKim, Luis; Rocha, Miguel; Maia, PauloArticleOpen access
2019A review on metabolomics data analysis for cancer applicationsCardoso, Sara; Baptista, Delora; Santos, R., et al.Conference paperRestricted access (UMinho)
May-2013Robust optimization of intradomain routing using evolutionary algorithmsPereira, Vítor Manuel Sá; Sousa, Pedro; Cortez, Paulo, et al.Book partRestricted access (UMinho)
5-Sep-2019SamPler - a novel method for selecting parameters for gene functional annotation routinesCruz, Fernando; Lagoa, Davide Rafael Santos; Mendes, João, et al.ArticleOpen access
2017Selected Extended Papers of the 11th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB)Fdez-Riverola, Florentino; Rocha, MiguelJournal editorialOpen access