Identifiability of large nonlinear biochemical networks

Abstract

Dynamic models formulated as a set of ordinary differential equations provide a detailed description of the time-evolution of a system. Such models of (bio)chemical reaction networks have contributed to important advances in biotechnology and biomedical applications, and their impact is foreseen to increase in the near future. Hence, the task of dynamic model building has attracted much attention from scientists working at the intersection of biochemistry, systems theory, mathematics, and computer science, among other disciplines-an area sometimes called systems biology. Before a model can be effectively used, the values of its unknown parameters have to be estimated from experimental data. A necessary condition for parameter estimation is identifiability, the property that, for a certain output, there exists a unique (or finite) set of parameter values that produces it. Identifiability can be analysed from two complementary points of view: structural (which searches for symmetries in the model equations that may prevent parameters from being uniquely determined) or practical (which focuses on the limitations introduced by the quantity and quality of the data available for parameter estimation). Both types of analyses are often difficult for nonlinear models, and their complexity increases rapidly with the problem size. Hence, assessing the identifiability of realistic dynamic models of biochemical networks remains a challenging task. Despite the fact that many methods have been developed for this purpose, it is still an open problem and an active area of research. Here we review the theory and tools available for the study of identifiability, and discuss some closely related concepts such as sensitivity to parameter perturbations, observability, distinguishability, and optimal experimental design, among others.