Please use this identifier to cite or link to this item: http://hdl.handle.net/1822/31726

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dc.contributor.authorSousa, Ana Margaridapor
dc.contributor.authorPereira, Maria Olíviapor
dc.contributor.authorAzevedo, N. F.por
dc.contributor.authorLourenço, Análiapor
dc.date.accessioned2014-12-09T12:18:00Z-
dc.date.available2014-12-09T12:18:00Z-
dc.date.issued2014-01-23-
dc.identifier.citationSousa, A. M.; Pereira, M. O.; Azevedo, N. F.; Lourenço, Anália, An harmonised vocabulary for communicating and interchanging Biofilms experimental results. Journal of Integrative Bioinformatics, 11(3), 249, 2014por
dc.identifier.issn1613-4516por
dc.identifier.urihttp://hdl.handle.net/1822/31726-
dc.description.abstractBiofilm studies are at the crossroads of Biology, Chemistry, Medicine, Material Science and Engineering, among other fields. Data harmonisation in Biofilms is therefore crucial to allow for researchers to collaborate, interchange, understand, and replicate studies at an inter-laboratory and inter-domain scale. The international Minimum Information About a Biofilms Experiment initiative has prepared a set of guidelines for documenting biofilms experiments and data, namely the minimum information checklist. This paper goes a step forward and describes a new ontology for the broad description of biofilm experiments and data. In such an interdisciplinary context we chose to rely on a common integration framework provided by a foundational ontology that facilitates the addition and extension of various sub-domain modules, and the consistent integration of terminology extracted from several existing ontologies, e.g. EXPO and ChEBI. The community is participating actively in the production of this resource, and it is already used by public biofilms-centred databases, such as BiofOmics, and bioinformatics tools, such as the Biofilms Experiment Workbench. This practical validation serves the purpose of disseminating the controlled vocabulary among researchers and identifying current limitations, glitches, and inconsistencies. Information branches will be added, extended or refactored according to user feedback and group discussions.por
dc.description.sponsorshipThe financial support from IBB-CEB, Fundação para a Ciência e Tecnologia (FCT), European Community fund FEDER, trough Program COMPETE, in the ambit of the projects PEstOE/EQB/LA0023/2013 and PTDC/SAUSAP/113196/2009/FCOMP-01-0124-FEDER-016012 and Ana Margarida Sousa PhD Grant (SFRH/BD/72551/2010), European Union Seventh Framework Programme [FP7/REGPOT-2012-2013.1] [grant number 316265], BIOCAPS and the Agrupamento INBIOMED from DXPCTSUG-FEDER unha maneira de facer Europa (2012/273) are gratefully acknowledged.por
dc.language.isoengpor
dc.publisherInformationsmanagement in der Biotechnologie (IMBIO)por
dc.relationinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/132966/PT-
dc.relationinfo:eu-repo/grantAgreement/FCT/5876-PPCDTI/113196/PT-
dc.relationinfo:eu-repo/grantAgreement/FCT/SFRH/SFRH%2FBD%2F72551%2F2010/PT-
dc.relationinfo:eu-repo/grantAgreement/EC/FP7/316265/EU-
dc.rightsopenAccesspor
dc.titleAn harmonised vocabulary for communicating and interchanging Biofilms experimental resultspor
dc.typearticle-
dc.peerreviewedyespor
dc.commentsCEB19485por
sdum.publicationstatuspublishedpor
degois.publication.firstPage1por
degois.publication.lastPage16por
degois.publication.issue3por
degois.publication.locationGermany-
degois.publication.titleJournal of Integrative Bioinformaticspor
degois.publication.volume11por
dc.date.updated2014-12-06T16:30:37Z-
dc.identifier.essn1613-4516-
dc.identifier.doi10.2390/biecoll-jib-2014-249por
dc.identifier.pmid25339083por
sdum.journalJournal of Integrative Bioinformaticspor
Appears in Collections:CEB - Publicações em Revistas/Séries Internacionais / Publications in International Journals/Series

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