Please use this identifier to cite or link to this item: http://hdl.handle.net/1822/17402

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dc.contributor.authorDeusdado, Sérgio-
dc.contributor.authorCarvalho, Paulo-
dc.date.accessioned2012-02-24T14:04:44Z-
dc.date.available2012-02-24T14:04:44Z-
dc.date.issued2009-06-
dc.identifier.citationDeusdado S., Carvalho P. (2009) Efficient Exact Pattern-Matching in Proteomic Sequences. In: Omatu S. et al. (eds) Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living. IWANN 2009. Lecture Notes in Computer Science, vol 5518. Springer, Berlin, Heidelberg-
dc.identifier.isbn9783642024801por
dc.identifier.issn0302-9743por
dc.identifier.urihttp://hdl.handle.net/1822/17402-
dc.description.abstractThis paper proposes a novel algorithm for complete exact pattern-matching focusing the specificities of protein sequences (alphabet of 20 symbols) but, also highly efficient considering larger alphabets. The searching strategy uses large search windows allowing multiple alignments per iteration. A new filtering heuristic, named compatibility rule, contributed decisively to the efficiency improvement. The new algorithm’s performance is, on average, superior in comparison with its best-rated competitors.por
dc.language.isoengpor
dc.publisherSpringer por
dc.rightsopenAccesspor
dc.subjectExact pattern-matchingpor
dc.subjectSearching algorithmspor
dc.subjectexact pattern-matchpor
dc.titleEfficient exact pattern-matching in proteomic sequencespor
dc.typeconferencePaper-
dc.peerreviewedyespor
dc.relation.publisherversionhttps://link.springer.com/chapter/10.1007%2F978-3-642-02481-8_178-
sdum.publicationstatuspublishedpor
oaire.citationStartPage1178por
oaire.citationEndPage+por
oaire.citationIssuePART 2por
oaire.citationVolume5518por
dc.identifier.doi10.1007/978-3-642-02481-8_178-
dc.subject.wosScience & Technologypor
sdum.journalLecture Notes in Computer Sciencepor
sdum.conferencePublicationDISTRIBUTED COMPUTING, ARTIFICIAL INTELLIGENCE, BIOINFORMATICS, SOFT COMPUTING, AND AMBIENT ASSISTED LIVING, PT II, PROCEEDINGSpor
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