| Issue Date | Title | Author(s) | Type | Access |
| 6-Aug-2017 | Automated pathway curation and improving metabolic model reconstruction based on phylogenetic analysis of pathway conservation | Edirisinghe, Janaka N.; Faria, J.; Liu, Filipe Alexandre Wang, et al. | Abstract | Open access |
| 24-Nov-2016 | Computing and applying atomic regulons to understand gene expression and regulation | Faria, J.; Davis, James J.; Edirisinghe, Janaka N., et al. | Article | Open access |
| Jul-2017 | Finite element analysis of stress extent at peri-implant bone surrounding external hexagon or Morse taper implants | Macedo, J. P.; Pereira, J.; Faria, J., et al. | Article | Open access |
| Dec-2016 | Inhibitory effect of essential oils on growth and on aflatoxins production by Aspergillus parasiticus | Soares, Célia; Morales-Valle, Héctor; Faria, J., et al. | Article | Restricted access (UMinho) |
| 2016 | Reconstruction of the regulatory network for Bacillus subtilis and reconciliation with gene expression data | Faria, J.; Overbeek, Ross; Taylor, Ronald C, et al. | Article | Open access |
| 2014 | Tapping the wealth of microbial data in high-throughput metabolic model reconstruction | Colasanti, Ric; Edirisinghe, Janaka N.; Khazaei, Tahmineh, et al. | Book part | Restricted access (UMinho) |
| 14-Oct-2018 | Towards a genome-wide transport systems encoding genes tracker | Lagoa, D.; Liu, Filipe; Ferreira, Eugénio C., et al. | Poster | Open access |
