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Issue DateTitleAuthor(s)TypeAccess
2014CBFA : phenotype prediction integrating metabolic models with constraints derived from experimental dataCarreira, Rafael; Evangelista, Pedro; Maia, Paulo, et al.ArticleOpen access
2011Challenges in integrating Escherichia coli molecular biology dataLourenço, Anália; Carneiro, S.; Ferreira, E. C., et al.ArticleOpen access
6-Jul-2017Combining high-value biotechnological processes: from wastewaters bioremediation to bacterial bioenergy feedstock productionCastro, Rita; Castro, P.; Silva, P., et al.AbstractOpen access
27-Jun-2009Combining syntactic and ontological knowledge to extract biologically relevant relations from scientific papersLourenço, Anália; Costa, Hugo; Carneiro, S., et al.Conference paperOpen access
2016A comparative analysis of dynamic models of the central carbon metabolism of Escherichia coliLima, Ana Patrícia; Baixinho, Vítor; Machado, Daniel, et al.ArticleOpen access
2016A comparative proteome analysis of Escherichia coli ΔrelA mutant cellsCarneiro, S.; Villas-Bôas, Silas; Ferreira, Eugénio C., et al.ArticleOpen access
18-Sep-2015Comparing knockout strategies from in silico rational strain design toolsVieira, José Vítor Castro; Maia, Paulo; Rocha, Miguel, et al.AbstractOpen access
27-Nov-2011Comparing results obtained from the Pathway Activity Profiling (PAPi) algorithm with 13C-based metabolic flux analysisAggio, R. B. M.; Carreira, R.; Carneiro, S., et al.AbstractOpen access
2009Comparison of adsorption equilibrium of fructose, glucose and sucrose on potassium gel-type and macroporous sodium ion-exchange resinsNobre, C.; Santos, Maria João; Dominguez, Ana, et al.ArticleOpen access
2006A comparison of algorithms for the optimization of fermentation processesMendes, Rui; Rocha, I.; Ferreira, E. C., et al.Conference paperOpen access
Mar-2012Comparison of H. pylori in silico metabolic model predictions with experimental dataCorreia, Daniela M.; Cunha, M. L. R.; Azevedo, N. F., et al.AbstractOpen access
Aug-2009Comparison of H. pylori in silico metabolic model predictions with experimental dataCorreia, Daniela M.; Cunha, M. L. R.; Azevedo, N. F., et al.AbstractOpen access
Jun-2016A computation tool for the estimation of biomass composition from genomic and transcriptomic informationSantos, Sophia Torres; Rocha, IsabelConference paperRestricted access (UMinho)
Mar-2011A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/ regulatory informationVilaça, Paulo; Rocha, I.; Rocha, MiguelArticleOpen access
2010Computational tools for data integration and regulatory network inference in systems biologyPinto, José P.; Rocha, I.; Rocha, MiguelAbstractOpen access
2012Computational tools for strain optimization by tuning the optimal level of gene expressionGonçalves, Emanuel; Rocha, I.; Rocha, MiguelConference paperOpen access
24-Nov-2016Computing and applying atomic regulons to understand gene expression and regulationFaria, J.; Davis, James J.; Edirisinghe, Janaka N., et al.ArticleOpen access
30-Nov-2007Constraint-based approach for in silico Escherichia coli combined regulatory/metabolic modellingCarneiro, S.; Maia, Paulo; Rocha, Miguel, et al.AbstractOpen access
May-2011Critical perspective on the consequences of the limited availability of kinetic data in metabolic dynamic modelingCosta, Rafael S.; Machado, C. D.; Rocha, I., et al.ArticleOpen access
2009A critical review on modelling formalisms and simulation tools in computational biosystemsMachado, C. D.; Costa, Rafael S.; Rocha, Miguel, et al.Conference paperOpen access