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Issue DateTitleAuthor(s)TypeAccess
2012An algorithm to assemble gene-protein-reaction associations for genome-scale metabolic model reconstructionCardoso, João; Vilaça, Paulo; Soares, Simão, et al.Conference paperOpen access
2012An integrated computational environment for elementary modes analysis of biochemical networksMaia, P.; Vilaça, P.; Rocha, I., et al.ArticleRestricted access (UMinho)
30-Dec-2014An integrated network visualization framework towards metabolic engineering applicationsNoronha, Alberto; Vilaça, Paulo; Rocha, MiguelArticleOpen access
8-Jun-2015Analysis of 140 published GSMs and identification of the most common representation problemsVilaça, P.; Cardoso, João; Rocha, I., et al.AbstractOpen access
2018Analyzing and designing cell factories with OptFluxVilaça, Paulo Ricardo Carvalho; Maia, Paulo; Giesteira, Hugo Miguel Melo, et al.Book partRestricted access (UMinho)
2014CBFA : phenotype prediction integrating metabolic models with constraints derived from experimental dataCarreira, Rafael; Evangelista, Pedro; Maia, Paulo, et al.ArticleOpen access
Mar-2011A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/ regulatory informationVilaça, Paulo; Rocha, I.; Rocha, MiguelArticleOpen access
21-Jun-2017A critical evaluation of automatic atom mapping algorithms and toolsOsório, Nuno; Vilaça, P.; Rocha, MiguelConference paperOpen access
Feb-2015Development and application of efficient pathway enumeration algorithms for metabolic engineering applicationsLiu, Filipe; Vilaça, Paulo; Rocha, I., et al.ArticleOpen access
2014Evaluating pathway enumeration algorithms in metabolic engineering case studiesLiu, Filipe; Vilaça, Paulo; Rocha, I., et al.Conference paperOpen access
2017Genome-wide semi-automated annotation of transporter systemsDias, Oscar; Gomes, Daniel G.; Vilaça, P., et al.ArticleOpen access
Mar-2012In silico metabolic engineering tool for simulation and optimization of microbial strains accounting integrated metabolic/regulatory informationVilaça, Paulo; Rocha, Miguel; Rocha, I.AbstractOpen access
Mar-2012In silico optimization of the production of amino-acids in Escherichia coliPereira, Rui; Vilaça, Paulo; Rocha, Miguel, et al.AbstractOpen access
18-Feb-2016A metabolic integrated yeast knowledgebase (MIYEASTK)Santos, Sophia; Liu, Filipe Alexandre Wang; Costa, Christopher, et al.AbstractOpen access
2010Metaheuristics for strain optimization using transcriptional information enriched metabolic modelsVilaça, Paulo; Maia, Paulo; Rocha, I., et al.Conference paperOpen access
8-Dec-2016MIYeastK: The Metabolic Integrated Yeast KnowledgebaseSantos, Sophia; Liu, F.; Costa, Christopher, et al.AbstractOpen access
11-Jul-2013OptFlux3: an improved platform for in silico design of cellular factoriesRocha, I.; Vilaça, Paulo; Maia, P., et al.AbstractOpen access
Apr-2010OptFlux: an open-source software platform for in silico metabolic engineeringRocha, I.; Maia, Paulo; Evangelista, Pedro, et al.ArticleOpen access
22-Mar-2010OptFlux: an open-source software platform for in silico metabolic engineeringRocha, I.; Maia, Paulo; Pinto, José Pedro Basto Gouveia Pereira, et al.PosterOpen access
Jun-2015Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenesCarneiro, Sónia; Miguel, Joana; Carreira, Rafael, et al.AbstractOpen access