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2010AIBench: a rapid application development framework for translational research in biomedicineRocha, Miguel; Glez-Peña, Daniel; Reboiro-Jato, M., et al.articleopenAccess
2012An integrated computational environment for elementary modes analysis of biochemical networksMaia, P.; Vilaça, P.; Rocha, I., et al.articlerestrictedAccess
2013An integrated framework for strain optimizationMaia, Paulo; Rocha, I.; Rocha, MiguelconferencePaperopenAccess
18-Set-2015Assessing the reliability of genome-scale metabolic models in the prediction of gene knockout phenotypesLopes, H.; Maia, Paulo; Patil, Kiran, et al.conferenceAbstractopenAccess
2014CBFA : phenotype prediction integrating metabolic models with constraints derived from experimental dataCarreira, Rafael; Evangelista, Pedro; Maia, Paulo, et al.articleopenAccess
18-Set-2015Comparing knockout strategies from in silico rational strain design toolsVieira, José Vítor Castro; Maia, Paulo; Rocha, Miguel, et al.conferenceAbstractopenAccess
30-Nov-2007Constraint-based approach for in silico Escherichia coli combined regulatory/metabolic modellingCarneiro, S.; Maia, Paulo; Rocha, Miguel, et al.conferenceAbstractopenAccess
Mar-2017Development of a framework for metabolic pathway analysis-driven strain optimization methodsVieira, Vítor; Maia, Paulo; Rocha, Isabel, et al.articleopenAccess
Jun-2016Development of an integrated framework for minimal cut set enumeration in constraint-based modelsVieira, Vítor; Maia, Paulo; Rocha, Isabel, et al.conferencePaperrestrictedAccess
18-Fev-2016Development of pathway analysis based algorithms for strain optimizationVieira, José Vítor Castro; Rocha, Miguel; Rocha, Isabel, et al.conferenceAbstractopenAccess
2010Enhancing Elementary Flux Modes analysis using filtering techniques in an integrated environmentMaia, Paulo; Pont, Marcellinus; Tomb, Jean-François, et al.conferencePaperopenAccess
1-Jul-2008Evaluating evolutionary multiobjective algorithms for the in silico optimization of mutant strainsMaia, Paulo; Rocha, I.; Ferreira, E. C., et al.conferencePaperopenAccess
2007Evaluating simulated annealing algorithms in the optimization of bacterial strainsRocha, Miguel; Mendes, Rui; Maia, Paulo, et al.conferencePaperopenAccess
1-Set-2008Evolutionary multiobjective algorithms for in silico metabolic engineeringRocha, I.; Maia, Paulo; Mendes, Rui, et al.conferenceAbstractopenAccess
2008A framework for the development of biomedical text mining software toolsLourenço, Anália; Carreira, Rafael; Carneiro, S., et al.conferencePaperopenAccess
Mar-2012A generic multi-criterion approach for mutant strain optimizationMaia, Paulo; Rocha, I.; Rocha, MiguelconferenceAbstractopenAccess
2017Identification of robust strain designs via tandem pFBA/LMOMA phenotype predictionMaia, Paulo; Rocha, Isabel Cristina Santos; Rocha, MiguelconferencePaperopenAccess
2016iFloW: an integrated logistics software system for inbound supply chain traceabilitySantos, Nuno António Lira Fernandes Faria; Barbosa, Diogo Jorge Fernandes Serra; Maia, P., et al.conferencePaperopenAccess
30-Nov-2009Implementing metaheuristic optimization algorithms with JECoLiEvangelista, Pedro; Maia, Paulo; Rocha, MiguelconferencePaperopenAccess
Mar-2016In silico constraint-based strain optimization methods: the quest for optimal cell factoriesSilva, P.; Rocha, Miguel; Rocha, I.articlerestrictedAccess