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2016An approach towards the reconstruction of regulatory networksPereira, Rafael Teodósio; Costa, Hugo; Mendes, RuiarticleopenAccess
Mai-2004An architecture for co-evolving agents in the ROBOCUP Simulation LeagueRocha, Miguel; Cortez, Paulo; Mendes, Rui, et al.conferencePaperrestrictedAccess
2006A comparison of algorithms for the optimization of fermentation processesMendes, Rui; Rocha, I.; Ferreira, E. C., et al.conferencePaperopenAccess
2008Differential evolution for the offline and online optimization of fed-batch fermentation processesMendes, Rui; Rocha, I.; Pinto, José P., et al.bookPartopenAccess
Set-2005DynDE : a differential evolution for dynamic optimization problemsMendes, Rui; Mohais, ArvindconferencePaperopenAccess
2007Evaluating simulated annealing algorithms in the optimization of bacterial strainsRocha, Miguel; Mendes, Rui; Maia, Paulo, et al.conferencePaperopenAccess
1-Set-2008Evolutionary multiobjective algorithms for in silico metabolic engineeringRocha, I.; Maia, Paulo; Mendes, Rui, et al.conferenceAbstractopenAccess
2008A framework for the integrated analysis of metabolic and regulatory networksMendes, Rui; Lourenço, Anália; Carneiro, S., et al.conferencePaperopenAccess
23-Ago-2008An integrated analysis of the metabolic and regulatory networks of escherichia coli K12Carneiro, S.; Lourenço, Anália; Mendes, Rui, et al.conferenceAbstractopenAccess
Set-2014Integrating biological databases in the context of transcriptional regulatory networksPereira, R.; Mendes, RuiarticleopenAccess
Set-2018JBiclustGE: Java API with Unified Biclustering Algorithms for Gene Expression Data AnalysisRocha, O.; Mendes, RuiarticlerestrictedAccess
2017Multi-objective learning of neural network time series prediction intervalsPereira, Pedro José; Cortez, Paulo; Mendes, RuiconferencePaperrestrictedAccess
2008Natural computation meta-heuristics for the in silico optimization of microbial strainsRocha, Miguel; Maia, Paulo; Mendes, Rui, et al.articleopenAccess
2008Network analysis of an integrated metabolic/regulatory model of Escherichia coliCarneiro, S.; Lourenço, Anália; Mendes, Rui, et al.conferenceAbstractopenAccess
2014Optimization of fed-batch fermentation processes with bio-inspired algorithmsRocha, Miguel; Mendes, Rui; Rocha, Orlando, et al.articleopenAccess
2002Particle Swarms for Feedforward Neural Network TrainingMendes, Rui; Cortez, Paulo; Rocha, Miguel, et al.conferencePaperrestrictedAccess
Mai-2002Population structure and particle swarm performanceKennedy, James; Mendes, RuiconferencePaperopenAccess
2015Reconstructing transcriptional regulatory networks using data integration and text miningPereira, Rafael T.; Costa, Hugo; Carneiro, S., et al.conferencePaperopenAccess
30-Jul-2014Reg4OptFlux: an OptFlux plug-in that comprises meta-heuristics approaches for metabolic engineering using integrated modelsRocha, Orlando; Vilaça, Paulo; Rocha, Miguel, et al.conferencePaperopenAccess
Set-2001Sitting guest at a wedding party : experiments on genetic and evolutionary constrained optimizationRocha, Miguel; Mendes, Rui; Cortez, Paulo, et al.conferencePaperopenAccess